<<<<<<< HEAD [grave_wright] Nextflow Workflow Report ======= [scruffy_curran] Nextflow Workflow Report >>>>>>> Add run from laptop

Nextflow workflow report

<<<<<<< HEAD

[grave_wright] (resumed run)

=======

[scruffy_curran]

>>>>>>> Add run from laptop

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: 0.

The full error message was:

Error executing process > 'sourmash_compare_sketches'

Caused by:
  Missing output file(s) `similarities_molecule-protein_ksize-15_log2sketchsize-10.csv` expected by process `sourmash_compare_sketches`

Command executed:

  sourmash compare         --ksize 15         --protein         --csv similarities_ksize=15_molecule=protein.csv         --traverse-directory .

Command exit status:
  0

Command output:
  min similarity in matrix: 0.036

Command error:
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4052784_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4051041_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR5810823_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050673_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050815_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4052883_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050969_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4053052_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4052763_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4053206_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR5810900_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050574_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050668_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050478_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050667_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050898_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050542_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050595_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4053003_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4050848_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR4053137_pass.sig
  
  loading ./sketches/molecule-protein_ksize-15_log2sketchsize-10/SRR5810792_pass.sig
  
                                                                                 
  
  loaded 1508 signatures total.
  
  

Work dir:
  s3://olgabot-maca/nextflow-bucket-dir-test/c3/7613efd8ca36f1457e5ac8007a5983

Tip: you can try to figure out what's wrong by changing to the process work dir and showing the script file named `.command.sh`
Run times
<<<<<<< HEAD Sun Mar 10 09:15:00 PDT 2019 - Sun Mar 10 09:40:22 PDT 2019 (duration: 25m 22s) ======= Sat Mar 16 19:09:22 PDT 2019 - Sat Mar 16 19:09:22 PDT 2019 (duration: 342ms) >>>>>>> Add run from laptop
  0 succeeded  
<<<<<<< HEAD
  1508 cached  
=======
  0 cached  
>>>>>>> Add run from laptop
  0 ignored  
  1 failed  
Nextflow command
nextflow run test.nf
CPU-Hours
<<<<<<< HEAD
66.9 (99.8% cached, 0.2% failed)
=======
(a few seconds)
>>>>>>> Add run from laptop
Launch directory
/Users/olgabot/code/nf-kmer-similarity
Work directory
/Users/olgabot/code/nf-kmer-similarity/work
Project directory
/Users/olgabot/code/nf-kmer-similarity
Script name
test.nf
Script ID
<<<<<<< HEAD
0552079219646d9ea0a017512b7b8457
=======
c75876362827fa2d0a0ed6082fa2c2b3
>>>>>>> Add run from laptop
Workflow session
e30c70f9-e6e1-4a75-8ab6-a5d8a1f6ae8b
Workflow profile
standard
Nextflow version
version 19.01.0, build 5050 (22-01-2019 11:19 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU Usage

Memory Usage

Job Duration

Disk I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)